Forgot to include link, but here's Daniel's system for Circus Ponies notebook I was talking about:

http://www.organizingcreativity.com/2009/09/circus-ponies-notebook-for-academic-writing-eg-thesis-writing/
http://www.organizingcreativity.com/2009/09/circus-ponies-notebook-the-best-tool-for-structuring-creative-writing-projects-esp-research-projects/
http://www.organizingcreativity.com/2009/09/circus-ponies-notebook-and-scrivener-for-writing/

Also, if any of you are interested in comparing Wikis. When I first did my search, I used WikiMatrix (http://www.wikimatrix.org/ before deciding to test out both Dokuwiki and ConnectedText.